IL_8AGU_077

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8AGU|1|f|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_077 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0634

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8AGU|1|f|A|1901
8AGU|1|f|G|1902
8AGU|1|f|U|1903
8AGU|1|f|C|1904
8AGU|1|f|G|1905
8AGU|1|f|G|1906
*
8AGU|1|f|C|2333
8AGU|1|f|U|2334
8AGU|1|f|G|2335
8AGU|1|f|U|2336

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3