IL_8AGU_107

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8AGU|1|f|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_107 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0725

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8AGU|1|f|G|2828
8AGU|1|f|U|2829
8AGU|1|f|G|2830
*
8AGU|1|f|U|2858
8AGU|1|f|U|2859
8AGU|1|f|U|2860
8AGU|1|f|U|2861
8AGU|1|f|U|2862

Current chains

Chain f

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain r

60S ribosomal protein L10