IL_8AGU_110

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8AGU|1|f|G|2945, 8AGU|1|f|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_110 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0392

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8AGU|1|f|C|2879
8AGU|1|f|U|2880
8AGU|1|f|C|2881
*
8AGU|1|f|G|2943
8AGU|1|f|U|2944
8AGU|1|f|G|2945
8AGU|1|f|A|2946
8AGU|1|f|G|2947

Current chains

Chain f

25S rRNA

Nearby chains

Chain 1

CAT-tailed nascent peptide

Chain I

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3