IL_8AGU_131

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_131 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1656

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8AGU|1|f|U|3300
8AGU|1|f|U|3301
8AGU|1|f|U|3302
8AGU|1|f|G|3303
*
8AGU|1|f|C|3311
8AGU|1|f|U|3312
8AGU|1|f|U|3313
8AGU|1|f|A|3314

Current chains

Chain f

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L17-A

Chain Q

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3