IL_8AGU_138

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8AGU|1|f|U|3354, 8AGU|1|f|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_138 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1747

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8AGU|1|f|C|3349
8AGU|1|f|C|3350
*
8AGU|1|f|G|3353
8AGU|1|f|U|3354
8AGU|1|f|U|3355
8AGU|1|f|G|3356

Current chains

Chain f

25S rRNA

Nearby chains