3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
8AGV|1|f|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AGV_054 not in the Motif Atlas
Homologous match to IL_5TBW_054
Geometric discrepancy: 0.1844
The information below is about IL_5TBW_054
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8AGV|1|f|U|1218
8AGV|1|f|C|1219
8AGV|1|f|U|1220
8AGV|1|f|A|1221
8AGV|1|f|G|1222
8AGV|1|f|A|1223
8AGV|1|f|C|1224
8AGV|1|f|A|1225
8AGV|1|f|G|1226
*
8AGV|1|f|C|1283
8AGV|1|f|C|1284
8AGV|1|f|G|1285
8AGV|1|f|A|1286
8AGV|1|f|A|1287

Current chains

Chain f
25S rRNA

Nearby chains

Chain 0
60S acidic ribosomal protein P0
Chain F
60S ribosomal protein L20-A
Chain Z
Ubiquitin-60S ribosomal protein L40
Chain q
60S ribosomal protein L9-A

Coloring options:


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