IL_8AGV_065
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAU*GUUUUC
- Length
- 10 nucleotides
- Bulged bases
- 8AGV|1|f|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_065 not in the Motif Atlas
- Homologous match to IL_5TBW_065
- Geometric discrepancy: 0.2425
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
8AGV|1|f|G|1623
8AGV|1|f|G|1624
8AGV|1|f|A|1625
8AGV|1|f|U|1626
*
8AGV|1|f|G|1817
8AGV|1|f|U|1818
8AGV|1|f|U|1819
8AGV|1|f|U|1820
8AGV|1|f|U|1821
8AGV|1|f|C|1822
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L34-A
- Chain X
- 60S ribosomal protein L38
- Chain d
- 60S ribosomal protein L41-A
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