IL_8AGX_054
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8AGX|1|f|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_054 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.1843
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8AGX|1|f|U|1218
8AGX|1|f|C|1219
8AGX|1|f|U|1220
8AGX|1|f|A|1221
8AGX|1|f|G|1222
8AGX|1|f|A|1223
8AGX|1|f|C|1224
8AGX|1|f|A|1225
8AGX|1|f|G|1226
*
8AGX|1|f|C|1283
8AGX|1|f|C|1284
8AGX|1|f|G|1285
8AGX|1|f|A|1286
8AGX|1|f|A|1287
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 0
- 60S acidic ribosomal protein P0
- Chain F
- 60S ribosomal protein L20-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain q
- 60S ribosomal protein L9-A
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