IL_8AGZ_020
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8AGZ|1|f|U|534, 8AGZ|1|f|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_020 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.0868
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8AGZ|1|f|G|531
8AGZ|1|f|A|532
8AGZ|1|f|A|533
8AGZ|1|f|U|534
8AGZ|1|f|G|535
8AGZ|1|f|U|536
8AGZ|1|f|A|537
8AGZ|1|f|G|538
*
8AGZ|1|f|U|553
8AGZ|1|f|A|554
8AGZ|1|f|U|555
8AGZ|1|f|U|556
8AGZ|1|f|A|557
8AGZ|1|f|U|558
8AGZ|1|f|A|559
8AGZ|1|f|G|560
8AGZ|1|f|C|561
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 0
- 60S acidic ribosomal protein P0
- Chain F
- 60S ribosomal protein L20-A
- Chain u
- 60S ribosomal protein L14-A
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