IL_8AGZ_118
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_118 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.0804
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8AGZ|1|f|C|3018
8AGZ|1|f|U|3019
8AGZ|1|f|U|3020
8AGZ|1|f|A|3021
8AGZ|1|f|G|3022
8AGZ|1|f|U|3023
8AGZ|1|f|A|3024
8AGZ|1|f|C|3025
*
8AGZ|1|f|G|3030
8AGZ|1|f|G|3031
8AGZ|1|f|A|3032
8AGZ|1|f|A|3033
8AGZ|1|f|C|3034
8AGZ|1|f|A|3035
8AGZ|1|f|G|3036
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L23-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain a
- RQC2 isoform 1
- Chain e
- E3 ubiquitin-protein ligase listerin
- Chain g
- Eukaryotic translation initiation factor 6
- Chain k
- 60S ribosomal protein L3
- Chain q
- 60S ribosomal protein L9-A
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