IL_8AKN_056

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0781

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8AKN|1|B|C|1303
8AKN|1|B|G|1304
8AKN|1|B|G|1305
8AKN|1|B|A|1306
8AKN|1|B|U|1307
8AKN|1|B|U|1308
*
8AKN|1|B|A|1329
8AKN|1|B|U|1330
8AKN|1|B|G|1331
8AKN|1|B|A|1332
8AKN|1|B|A|1333
8AKN|1|B|G|1334

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13