IL_8AM9_033
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 8AM9|1|B|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_033 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.0888
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8AM9|1|B|U|684
8AM9|1|B|G|685
8AM9|1|B|U|686
8AM9|1|B|A|687
8AM9|1|B|G|688
*
8AM9|1|B|C|699
8AM9|1|B|G|700
8AM9|1|B|U|701
8AM9|1|B|A|702
8AM9|1|B|G|703
8AM9|1|B|A|704
8AM9|1|B|G|705
8AM9|1|B|A|706
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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