IL_8AM9_054

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_054 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0927

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8AM9|1|B|C|1303
8AM9|1|B|G|1304
8AM9|1|B|G|1305
8AM9|1|B|A|1306
8AM9|1|B|U|1307
8AM9|1|B|U|1308
*
8AM9|1|B|A|1329
8AM9|1|B|U|1330
8AM9|1|B|G|1331
8AM9|1|B|A|1332
8AM9|1|B|A|1333
8AM9|1|B|G|1334

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13