IL_8AM9_155

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8AM9|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_155 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.077

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8AM9|1|a|C|2636
8AM9|1|a|U|2637
8AM9|1|a|G|2638
8AM9|1|a|A|2639
8AM9|1|a|G|2640
*
8AM9|1|a|C|2774
8AM9|1|a|G|2775
8AM9|1|a|A|2776
8AM9|1|a|G|2777
8AM9|1|a|A|2778
8AM9|1|a|U|2779
8AM9|1|a|G|2780
8AM9|1|a|A|2781
8AM9|1|a|G|2782

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13