IL_8ANA_065

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8ANA|1|a|A|1801, 8ANA|1|a|C|1816, 8ANA|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANA_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0431

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8ANA|1|a|U|1798
8ANA|1|a|G|1799
8ANA|1|a|C|1800
8ANA|1|a|A|1801
8ANA|1|a|A|1802
8ANA|1|a|A|1803
8ANA|1|a|C|1804
*
8ANA|1|a|G|1813
8ANA|1|a|G|1814
8ANA|1|a|A|1815
8ANA|1|a|C|1816
8ANA|1|a|G|1817
8ANA|1|a|U|1818
8ANA|1|a|A|1819
8ANA|1|a|U|1820
8ANA|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2