IL_8AP4_093

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8AP4|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_093 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8AP4|1|a|C|2636
8AP4|1|a|U|2637
8AP4|1|a|G|2638
8AP4|1|a|A|2639
8AP4|1|a|G|2640
*
8AP4|1|a|C|2774
8AP4|1|a|G|2775
8AP4|1|a|A|2776
8AP4|1|a|G|2777
8AP4|1|a|A|2778
8AP4|1|a|U|2779
8AP4|1|a|G|2780
8AP4|1|a|A|2781
8AP4|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13