IL_8B2L_001

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_001 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.0812

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8B2L|1|A3|G|1
8B2L|1|A3|C|2
8B2L|1|A3|G|3
*
8B2L|1|B3|C|159
8B2L|1|B3|A|160
8B2L|1|B3|C|161

Current chains

Chain A3

25S rRNA

Chain B3

5.8S rRNA

Nearby chains

Chain c3

60S ribosomal protein L7a

Chain k3

60S ribosomal protein L23a