IL_8B2L_002

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8B2L|1|B3|C|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_002 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.4138

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8B2L|1|A3|C|5
8B2L|1|A3|C|6
*
8B2L|1|B3|G|155
8B2L|1|B3|C|156
8B2L|1|B3|G|157

Current chains

Chain A3

25S rRNA

Chain B3

5.8S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain c3

60S ribosomal protein L7a

Chain k3

60S ribosomal protein L23a