IL_8B2L_020

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGC*GG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|G|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_020 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.1949

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8B2L|1|A3|C|433
8B2L|1|A3|G|434
8B2L|1|A3|G|435
8B2L|1|A3|C|436
*
8B2L|1|A3|G|632
8B2L|1|A3|G|633

Current chains

Chain A3

25S rRNA

Nearby chains

Chain N3

eL28 (60S ribosomal protein L28)

Chain R3

60S ribosomal protein L32-1

Chain S3

eL33 (60S ribosomal protein L35a)