IL_8B2L_021

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_021 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1932

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

8B2L|1|A3|G|447
8B2L|1|A3|G|448
*
8B2L|1|A3|C|487
8B2L|1|A3|U|488
8B2L|1|A3|C|489

Current chains

Chain A3

25S rRNA

Nearby chains

Chain N3

eL28 (60S ribosomal protein L28)

Chain R3

60S ribosomal protein L32-1

Chain b3

eL6 (60S ribosomal protein L6)