IL_8B2L_026
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAAAGC*GAACG
- Length
- 12 nucleotides
- Bulged bases
- 8B2L|1|A3|C|523, 8B2L|1|A3|A|524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_026 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3672
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.5
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8B2L|1|A3|C|522
8B2L|1|A3|C|523
8B2L|1|A3|A|524
8B2L|1|A3|A|525
8B2L|1|A3|A|526
8B2L|1|A3|G|527
8B2L|1|A3|C|528
*
8B2L|1|A3|G|551
8B2L|1|A3|A|552
8B2L|1|A3|A|553
8B2L|1|A3|C|554
8B2L|1|A3|G|555
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain E3
- 60S ribosomal protein L14-1
- Chain I3
- 60S ribosomal protein L18a
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain s3
- uL4 (60S ribosomal protein L4)
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