IL_8B2L_032

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUC*GUGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_032 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3031

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8B2L|1|A3|G|735
8B2L|1|A3|G|736
8B2L|1|A3|A|737
8B2L|1|A3|U|738
8B2L|1|A3|C|739
*
8B2L|1|A3|G|750
8B2L|1|A3|U|751
8B2L|1|A3|G|752
8B2L|1|A3|C|753
8B2L|1|A3|A|754
8B2L|1|A3|C|755

Current chains

Chain A3

25S rRNA

Nearby chains

Chain G3

60S ribosomal protein L18-2-like

Chain O3

60S ribosomal protein L29