IL_8B2L_037

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|A|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_037 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.1173

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

8B2L|1|A3|G|838
8B2L|1|A3|C|839
*
8B2L|1|A3|G|905
8B2L|1|A3|A|906
8B2L|1|A3|C|907

Current chains

Chain A3

25S rRNA

Nearby chains

Chain T3

60S ribosomal protein L34

Chain a3

60S ribosomal protein L37a

Chain o3

uL2 (60S ribosomal protein L8)