IL_8B2L_042
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8B2L|1|A3|A|930, 8B2L|1|A3|A|931
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_042 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0515
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|G|917
8B2L|1|A3|OMG|918
8B2L|1|A3|G|919
*
8B2L|1|A3|U|929
8B2L|1|A3|A|930
8B2L|1|A3|A|931
8B2L|1|A3|U|932
8B2L|1|A3|C|933
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain F3
- Ribosomal protein L15
- Chain V3
- Ribosomal protein L37
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain l3
- nascent chain
- Chain o3
- uL2 (60S ribosomal protein L8)
Coloring options: