IL_8B2L_043
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UU(PSU)C*GA(PSU)A
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_043 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.3296
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
8B2L|1|A3|U|964
8B2L|1|A3|U|965
8B2L|1|A3|PSU|966
8B2L|1|A3|C|967
*
8B2L|1|A3|G|974
8B2L|1|A3|A|975
8B2L|1|A3|PSU|976
8B2L|1|A3|A|977
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain O3
- 60S ribosomal protein L29
- Chain f3
- uL15 (60S ribosomal protein L27a)
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