IL_8B2L_055
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUACG*CUACA
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|A3|C|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_055 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1514
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8B2L|1|A3|U|1178
8B2L|1|A3|U|1179
8B2L|1|A3|A|1180
8B2L|1|A3|C|1181
8B2L|1|A3|G|1182
*
8B2L|1|A3|C|1340
8B2L|1|A3|U|1341
8B2L|1|A3|A|1342
8B2L|1|A3|C|1343
8B2L|1|A3|A|1344
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain R3
- 60S ribosomal protein L32-1
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain q3
- 60S ribosomal protein L7-4-like
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