IL_8B2L_059
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUCCCACAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8B2L|1|A3|U|1208, 8B2L|1|A3|A|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_059 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0867
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|A3|G|1206
8B2L|1|A3|A|1207
8B2L|1|A3|U|1208
8B2L|1|A3|C|1209
8B2L|1|A3|C|1210
8B2L|1|A3|C|1211
8B2L|1|A3|A|1212
8B2L|1|A3|C|1213
8B2L|1|A3|A|1214
8B2L|1|A3|A|1215
8B2L|1|A3|A|1216
8B2L|1|A3|G|1217
*
8B2L|1|A3|C|1311
8B2L|1|A3|G|1312
8B2L|1|A3|A|1313
8B2L|1|A3|A|1314
8B2L|1|A3|A|1315
8B2L|1|A3|A|1316
8B2L|1|A3|U|1317
8B2L|1|A3|G|1318
8B2L|1|A3|G|1319
8B2L|1|A3|A|1320
8B2L|1|A3|U|1321
8B2L|1|A3|G|1322
8B2L|1|A3|G|1323
8B2L|1|A3|C|1324
8B2L|1|A3|G|1325
8B2L|1|A3|C|1326
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain Y3
- ubiquitin-60S ribosomal protein L40
- Chain d3
- uL13 (60S ribosomal protein L13a)
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain r3
- uL3 (60S ribosomal protein L3)
Coloring options: