IL_8B2L_062

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

8B2L|1|A3|G|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_062 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0484

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8B2L|1|A3|C|1388
8B2L|1|A3|G|1389
8B2L|1|A3|C|1390
*
8B2L|1|A3|G|1439
8B2L|1|A3|G|1440
8B2L|1|A3|U|1441
8B2L|1|A3|G|1442

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain N3

eL28 (60S ribosomal protein L28)

Chain R3

60S ribosomal protein L32-1

Chain f3

uL15 (60S ribosomal protein L27a)

Chain s3

uL4 (60S ribosomal protein L4)