IL_8B2L_065
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)C*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_065 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.274
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8B2L|1|A3|G|1455
8B2L|1|A3|U|1456
8B2L|1|A3|A|1457
8B2L|1|A3|G|1458
8B2L|1|A3|U|1459
8B2L|1|A3|A2M|1460
8B2L|1|A3|OMG|1461
8B2L|1|A3|C|1462
*
8B2L|1|A3|G|2356
8B2L|1|A3|C|2357
8B2L|1|A3|G|2358
8B2L|1|A3|A|2359
8B2L|1|A3|A|2360
8B2L|1|A3|A|2361
8B2L|1|A3|C|2362
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: