IL_8B2L_070
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAAC*GCA
- Length
- 8 nucleotides
- Bulged bases
- 8B2L|1|A3|C|1525
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_070 not in the Motif Atlas
- Geometric match to IL_4LFB_037
- Geometric discrepancy: 0.3534
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_03866.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|A3|U|1512
8B2L|1|A3|G|1513
8B2L|1|A3|A|1514
8B2L|1|A3|A|1515
8B2L|1|A3|C|1516
*
8B2L|1|A3|G|1524
8B2L|1|A3|C|1525
8B2L|1|A3|A|1526
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain X3
- 60S ribosomal protein L39-3
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain l3
- nascent chain
Coloring options: