IL_8B2L_076

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_076 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2029

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|G|1623
8B2L|1|A3|A|1624
8B2L|1|A3|C|1625
*
8B2L|1|A3|G|1831
8B2L|1|A3|C|1832

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain W3

60S ribosomal protein L38