IL_8B2L_084

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8B2L|1|A3|G|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_084 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0809

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8B2L|1|A3|U|1698
8B2L|1|A3|U|1699
8B2L|1|A3|A|1700
8B2L|1|A3|A|1701
8B2L|1|A3|C|1702
*
8B2L|1|A3|G|1752
8B2L|1|A3|G|1753
8B2L|1|A3|A|1754
8B2L|1|A3|A|1755
8B2L|1|A3|G|1756
8B2L|1|A3|A|1757

Current chains

Chain A3

25S rRNA

Nearby chains

Chain T3

60S ribosomal protein L34

Chain W3

60S ribosomal protein L38