IL_8B2L_092
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8B2L|1|A3|A|1937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_092 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.0702
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|C|1924
8B2L|1|A3|G|1925
8B2L|1|A3|U|1926
8B2L|1|A3|A|1927
8B2L|1|A3|A|1928
8B2L|1|A3|C|1929
*
8B2L|1|A3|G|1934
8B2L|1|A3|G|1935
8B2L|1|A3|A|1936
8B2L|1|A3|A|1937
8B2L|1|A3|A|1938
8B2L|1|A3|A|1939
8B2L|1|A3|G|1940
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain a3
- 60S ribosomal protein L37a
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
- Chain p3
- 60S ribosomal protein L41
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