IL_8B2L_098

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGG*UGUUUACG

Length

14 nucleotides

Bulged bases

8B2L|1|A3|U|2163, 8B2L|1|A3|U|2178, 8B2L|1|A3|C|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_098 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0711

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8B2L|1|A3|C|2160
8B2L|1|A3|G|2161
8B2L|1|A3|A|2162
8B2L|1|A3|U|2163
8B2L|1|A3|G|2164
8B2L|1|A3|G|2165
*
8B2L|1|A3|U|2176
8B2L|1|A3|G|2177
8B2L|1|A3|U|2178
8B2L|1|A3|U|2179
8B2L|1|A3|U|2180
8B2L|1|A3|A|2181
8B2L|1|A3|C|2182
8B2L|1|A3|G|2183

Current chains

Chain A3

25S rRNA

Nearby chains

Chain a3

60S ribosomal protein L37a

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain o3

uL2 (60S ribosomal protein L8)