IL_8B2L_099
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- U(PSU)C*GGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_099 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.2182
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8B2L|1|A3|U|2193
8B2L|1|A3|PSU|2194
8B2L|1|A3|C|2195
*
8B2L|1|A3|G|2318
8B2L|1|A3|G|2319
8B2L|1|A3|A|2320
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain a3
- 60S ribosomal protein L37a
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
- Chain o3
- uL2 (60S ribosomal protein L8)
- Chain p3
- 60S ribosomal protein L41
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