IL_8B2L_101

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8B2L|1|A3|A|2245, 8B2L|1|A3|A|2246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_101 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0565

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8B2L|1|A3|U|2203
8B2L|1|A3|G|2204
*
8B2L|1|A3|U|2244
8B2L|1|A3|A|2245
8B2L|1|A3|A|2246
8B2L|1|A3|A|2247

Current chains

Chain A3

25S rRNA

Nearby chains

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain o3

uL2 (60S ribosomal protein L8)