IL_8B2L_103

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAUG*C(OMG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_103 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.3089

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|2209
8B2L|1|A3|A|2210
8B2L|1|A3|A|2211
8B2L|1|A3|U|2212
8B2L|1|A3|G|2213
*
8B2L|1|A3|C|2238
8B2L|1|A3|OMG|2239
8B2L|1|A3|C|2240

Current chains

Chain A3

25S rRNA

Nearby chains

Chain W2

Transfer RNA; tRNA

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain o3

uL2 (60S ribosomal protein L8)