IL_8B2L_109

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

A(OMG)CGG*UACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_109 not in the Motif Atlas

Geometric match to IL_8C3A_111

Geometric discrepancy: 0.35

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|A3|A|2393
8B2L|1|A3|OMG|2394
8B2L|1|A3|C|2395
8B2L|1|A3|G|2396
8B2L|1|A3|G|2397
*
8B2L|1|A3|U|2989
8B2L|1|A3|A|2990
8B2L|1|A3|C|2991
8B2L|1|A3|U|2992

Current chains

Chain A3

25S rRNA

Nearby chains

Chain d3

uL13 (60S ribosomal protein L13a)

Chain j3

50S ribosomal protein L22, chloroplastic

Chain r3

uL3 (60S ribosomal protein L3)