IL_8B2L_112

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(OMG)(OMU)U*ACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_112 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.184

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8B2L|1|A3|U|2411
8B2L|1|A3|OMG|2412
8B2L|1|A3|OMU|2413
8B2L|1|A3|U|2414
*
8B2L|1|A3|A|2814
8B2L|1|A3|C|2815
8B2L|1|A3|A|2816

Current chains

Chain A3

25S rRNA

Nearby chains

Chain O3

60S ribosomal protein L29

Chain f3

uL15 (60S ribosomal protein L27a)

Chain s3

uL4 (60S ribosomal protein L4)