IL_8B2L_123
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAA*UGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_123 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1075
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|C|2669
8B2L|1|A3|A|2670
8B2L|1|A3|A|2671
*
8B2L|1|A3|U|2689
8B2L|1|A3|G|2690
8B2L|1|A3|U|2691
8B2L|1|A3|G|2692
8B2L|1|A3|G|2693
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain h3
- 60S ribosomal protein L5-like
- Chain t3
- uL5 (60S ribosomal protein L11)
Coloring options: