IL_8B2L_129

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8B2L|1|A3|C|2775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_129 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2698

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|G|2773
8B2L|1|A3|A|2774
8B2L|1|A3|C|2775
8B2L|1|A3|C|2776
*
8B2L|1|A3|G|2790
8B2L|1|A3|C|2791

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain G3

60S ribosomal protein L18-2-like

Chain Z3

60S ribosomal protein L44

Chain f3

uL15 (60S ribosomal protein L27a)