IL_8B2L_131

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8B2L|1|A3|U|2863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_131 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.067

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|G|2831
8B2L|1|A3|U|2832
8B2L|1|A3|G|2833
*
8B2L|1|A3|U|2861
8B2L|1|A3|U|2862
8B2L|1|A3|U|2863
8B2L|1|A3|U|2864
8B2L|1|A3|U|2865

Current chains

Chain A3

25S rRNA

Nearby chains

Chain g3

uL16 (60S ribosomal protein L10)

Chain r3

uL3 (60S ribosomal protein L3)