IL_8B2L_150

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8B2L|1|A3|A|3132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_150 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8B2L|1|A3|A|3105
8B2L|1|A3|U|3106
8B2L|1|A3|U|3107
8B2L|1|A3|A|3108
8B2L|1|A3|U|3109
*
8B2L|1|A3|A|3129
8B2L|1|A3|G|3130
8B2L|1|A3|A|3131
8B2L|1|A3|A|3132
8B2L|1|A3|U|3133

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain d3

uL13 (60S ribosomal protein L13a)

Chain u3

uL6 (60S ribosomal protein L9)