IL_8B2L_153

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|A|3175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_153 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.3008

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

8B2L|1|A3|G|3174
8B2L|1|A3|A|3175
8B2L|1|A3|C|3176
*
8B2L|1|A3|G|3205
8B2L|1|A3|C|3206

Current chains

Chain A3

25S rRNA

Nearby chains

Chain E3

60S ribosomal protein L14-1

Chain S3

eL33 (60S ribosomal protein L35a)

Chain b3

eL6 (60S ribosomal protein L6)

Chain d3

uL13 (60S ribosomal protein L13a)