IL_8B2L_156

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAG*CCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_156 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.2367

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24466.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|C|3219
8B2L|1|A3|U|3220
8B2L|1|A3|A|3221
8B2L|1|A3|A|3222
8B2L|1|A3|G|3223
*
8B2L|1|A3|C|3250
8B2L|1|A3|C|3251
8B2L|1|A3|G|3252

Current chains

Chain A3

25S rRNA

Nearby chains

Chain E3

60S ribosomal protein L14-1

Chain S3

eL33 (60S ribosomal protein L35a)