IL_8B2L_158

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUG*C(OMU)UA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_158 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2238

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8B2L|1|A3|U|3292
8B2L|1|A3|U|3293
8B2L|1|A3|U|3294
8B2L|1|A3|G|3295
*
8B2L|1|A3|C|3303
8B2L|1|A3|OMU|3304
8B2L|1|A3|U|3305
8B2L|1|A3|A|3306

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Q3

eL31 (60S ribosomal protein L31)

Chain j3

50S ribosomal protein L22, chloroplastic

Chain r3

uL3 (60S ribosomal protein L3)