IL_8B2L_160

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CG*UUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_160 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.2538

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8B2L|1|A3|C|3316
8B2L|1|A3|G|3317
*
8B2L|1|A3|U|3373
8B2L|1|A3|U|3374
8B2L|1|A3|U|3375
8B2L|1|A3|G|3376

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Q3

eL31 (60S ribosomal protein L31)

Chain r3

uL3 (60S ribosomal protein L3)