IL_8B2L_162

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8B2L|1|A3|G|3361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_162 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0769

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8B2L|1|A3|U|3324
8B2L|1|A3|G|3325
8B2L|1|A3|U|3326
8B2L|1|A3|A|3327
8B2L|1|A3|A|3328
8B2L|1|A3|G|3329
*
8B2L|1|A3|C|3359
8B2L|1|A3|U|3360
8B2L|1|A3|G|3361
8B2L|1|A3|A|3362
8B2L|1|A3|G|3363

Current chains

Chain A3

25S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain Q3

eL31 (60S ribosomal protein L31)

Chain r3

uL3 (60S ribosomal protein L3)