IL_8B2L_164

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_164 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.258

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8B2L|1|A3|A|3334
8B2L|1|A3|G|3335
8B2L|1|A3|A|3336
8B2L|1|A3|G|3337
*
8B2L|1|A3|C|3352
8B2L|1|A3|G|3353
8B2L|1|A3|A|3354
8B2L|1|A3|U|3355

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain P1

40S ribosomal protein S8