IL_8B2L_165

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GCUG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|C|3346, 8B2L|1|A3|U|3347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_165 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.3411

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8B2L|1|A3|C|3341
8B2L|1|A3|C|3342
*
8B2L|1|A3|G|3345
8B2L|1|A3|C|3346
8B2L|1|A3|U|3347
8B2L|1|A3|G|3348

Current chains

Chain A3

25S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8